NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10026503

Scaffold Ga0206125_10026503


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10026503 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3279
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008780Metagenome328Y
F008977Metagenome / Metatranscriptome325Y
F035485Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_100265034F008780N/AMKKRHLVSLVTIIKDCLHAHSRANWDDKNVVETVAEVITKKFAKYMKDQEGLEKLGKTEEDYLAPPNGLNQ
Ga0206125_100265037F008977N/AMELKEKNEEQIIKVLSFILSKLDTLEIEQSRHKEMFYKVRENLTNANDLINQILDVLELENPELYTKTVEQYKDSHLKDMVSTLDKHMSEFDDEQLIDLLTQIVGDA
Ga0206125_100265038F035485GGAGMIKHDMIIFLEDLKNLLQETELEEKENEVIIEVIDLIDDKIIDLES

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