Basic Information | |
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Taxon OID | 3300020165 Open in IMG/M |
Scaffold ID | Ga0206125_10026503 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3279 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F008780 | Metagenome | 328 | Y |
F008977 | Metagenome / Metatranscriptome | 325 | Y |
F035485 | Metagenome / Metatranscriptome | 172 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0206125_100265034 | F008780 | N/A | MKKRHLVSLVTIIKDCLHAHSRANWDDKNVVETVAEVITKKFAKYMKDQEGLEKLGKTEEDYLAPPNGLNQ |
Ga0206125_100265037 | F008977 | N/A | MELKEKNEEQIIKVLSFILSKLDTLEIEQSRHKEMFYKVRENLTNANDLINQILDVLELENPELYTKTVEQYKDSHLKDMVSTLDKHMSEFDDEQLIDLLTQIVGDA |
Ga0206125_100265038 | F035485 | GGAG | MIKHDMIIFLEDLKNLLQETELEEKENEVIIEVIDLIDDKIIDLES |
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