Scaffold Ga0206125_10024374

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10024374
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3493
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F008590	Metagenome	331	Y
F105146	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1002437410	F008590	GGAGG	MKIGDLVTYWYQRPRWLKGQSVHVGLVIETGVYTGNTDVKVLWTGYSDPTIEATHHLSLIDDSLTSS
Ga0206125_100243742	F005547	N/A	MKVWVMQGSYEGELFSSVHMTEKGCALACIFDITEFLGVEDEETALQVMNSCYPYTETDGEQTEAFEWDPAKLKEMTSEQLWKIFSEWSEISWDRMADRSFYLDANRVEIQG
Ga0206125_100243748	F105146	AGGAG	MIKVGNMVQSKYIVKRHRARIGLVMQLRDGAFENQPLAQVYWPHSRTFGWVATKDMEIVNASR