Scaffold Ga0206125_10022065

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10022065
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3760
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003514	Metagenome / Metatranscriptome	482	Y
F004191	Metagenome / Metatranscriptome	449	Y
F005335	Metagenome	404	Y
F028528	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100220651	F005335	N/A	IVITMYGCSTKVKVSCNVNDINTVIEDCKEQPQFGISKEF
Ga0206125_1002206512	F028528	AGGAGG	MNYFKKIIDWVLTAYEPEFKPKRVYKYKGKTYYLRKRKKKRX
Ga0206125_100220658	F003514	AGGAG	MITPEDYNKLRQEELILKAAKSSGAKEAEMLHGSLFVTFTPGFVDVLAKELKGVLDKLLDNTTVKMYNTTNNEYAYDFI
Ga0206125_100220659	F004191	GGCGG	MSTFKEVMATFFAVFGIIAIVGTVGAVETDQYMLALALFVMGTTNMFLSIICQEK