Scaffold Ga0206125_10018944

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10018944
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4213
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008563	Metagenome / Metatranscriptome	331	Y
F010105	Metagenome / Metatranscriptome	308	Y
F100883	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100189445	F010105	N/A	MENLHTFESLNEAKKLDTIKKQVLDFAEKNGKSKWGDLQKHILTLKGLDPKDRDNRGQFSSYFSGGSSWQSKGKDTKLGRDANSHGLLMRPTKKDPRYLEKDGNEYVVKVWDGKSKLS
Ga0206125_100189447	F008563	N/A	MGIAFANIGGQKYLFPGWIPVEDHISFDDVEVTNPYDNIKKEIFQVTGSTGNKYTVTKNGNRLSCDCPAGKFRGTCKHSKQIAAELA
Ga0206125_100189449	F100883	AGAAG	MNFHNIIFKREDGLGGFRSTTHFQNGLKLSVSAGMGVYCTPREDLSSINQFLSFEIGIFDSDGEWVTKEFFPDHNDDVVGWLSRDEINDLMDRIANHGKPQKDIPGFEGTLDQLNNLKI