Scaffold Ga0206125_10018828

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10018828
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4233
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070557	Metagenome / Metatranscriptome	123	N
F077258	Metagenome	117	N
F079926	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100188281	F070557	N/A	MSNEIKQNIIRDLQGDVLSGDHYTINMFSCWLDGSYLGESHYRKNLAAITECNNNRKKLRSFVINAFTSYIAHDAACSYGYAQKVLVEFLGLDTLNKLNEQLIDNTIEFHSTYCEAA
Ga0206125_1001882810	F077258	GAGG	MSIDPRTVRQIKMAAEQGLTQAETSRLLDMNQSYVARAKALYNITFIKHEDKYAHFRSPQNDIETNENELIDDRGHEKPRPDQGQEILQMVFTRAATSDGIDGIETEKPPKTIQELKERLKQNDKQHHYEIIYSFKLQEFEKQQIKLGLRTPLHRGRKIQSLSTSCANKNIALNSQSFPAKHTVAKQQRILKSINRGGRYTTSMIARNTGLSV
Ga0206125_100188285	F079926	GGAG	MTTKVVAQPWYDMAIQDKFSIQVDELTFHILDELGKPIVNDDLTPMKFRSLRELDFVTDYIDLDDLEVI