Scaffold Ga0206125_10015928

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10015928
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4794
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002093	Metagenome / Metatranscriptome	594	Y
F005720	Metagenome / Metatranscriptome	392	Y
F049044	Metagenome / Metatranscriptome	147	N
F051469	Metagenome	144	Y
F073442	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100159282	F051469	AGGAG	MIEKFTVEIEVGDRVEMGRMHLANQTVKAIEIDKWGHPVMVLSSGRKRGLFNMRLKKLIPEDVKRVQEPAEVMMTKEQWAEAQAKIDKAKAE
Ga0206125_100159283	F005720	AGGAG	MATSNATANMCRRQAFTGKGITFIEMMFDDEMVTTSTTPDTKDSVFNAMSKLVGTFGTIIAQSYALGCKATEKDAALATSIVEDELCDYYTFAVEGTPGQFNAADSAGDINADPDQANASDPGVIADAEADIEVEILARISENDSAGGVHVDVRYLPADGVTSAGAEVVYGFNSARVNA
Ga0206125_100159284	F049044	AGGAG	MAYSTTAVAGGKGNFSLNQNFEVEGVDVTLLTVDFIVDVSAETGDLTTGSTTAGLQMVRHAFEHQGLRILAEGPLVDSDTQKTYMVRTDCLDSLSSTTTVAALQAYIRTLDQSSSSFPGVTADLTGATVTETKIGILTANAVS
Ga0206125_100159285	F002093	AGGAGG	MAYTGTLSAGGPGNFVTPNTAHSADGVEVKFITIDYINTMAAEITHQHASAAATAGLNLSMEAIQNQGVNILGKGALGNSNTEQTYMVRADAMDTISSTTTLAAIQAAIRALNALTPDIVTATISSATSNDEDMSDTAV
Ga0206125_100159287	F073442	N/A	MDLKSVNARKLRYILSVTSENENLPKSLCLLMTLASDTYFKKGVNIHVFIEHMQRNFILTDVMKTGNHIRLERFINLHSLTDQTFDLEGEYYTLHNYDLDNYDRKFAIIDCRAQNDRLKDNTEFYIELKKRCNLLHSQGFVFIKANPWESLDNINSQKQYPEIDLEHIKWTGDASWFWFYMYDKHKDKRFTFDHTNKKYDFLYLNKQPREHRAKLYSKLTSKDILSNSLYTNWPARKLPAAYELPWAQDYPRYGMDQDIFEKPYNDTACSIVSETNDNDFEVFMTEKIWKPIIAQQVFVVHGNYLYLQRLRDMGFKTFNSYFEEAYDLDKDPDTRINTIVDVCDRLREAPWQDIYLHTKALRKHNHDTFFNKEKLSLEIDKTLNLFLEFADSSQVSS