Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10014369 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10014369 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5192
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (22.22%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5192

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (22.22%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015092	Metagenome / Metatranscriptome	257	Y
F027515	Metagenome / Metatranscriptome	194	Y
F030088	Metagenome	186	Y
F050375	Metagenome / Metatranscriptome	145	N
F050747	Metagenome	145	N
F055653	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1001436910	F055653	N/A	MRKKMIKDINNPQFNIANVPFEQRVDCLNQLSDARDNGVITQDEMLNIACIQWFDQYQISKLVKV
Ga0206125_1001436915	F030088	N/A	MGFKLNIVTKTKMSAKQMSTTLITLGQNEVFKYNNKMYVPFSAMSVVFNSKGATKKFDKDLDCLVHPTRGKLFCLPKNVEHYIKVV
Ga0206125_1001436916	F050375	GGA	MMKKEINKHGTIGPYDCEGNQVEMDWKWIDDEMEATITEMRFDGVKVKLNNVAEWIVDSLFQEVPYDELMVA
Ga0206125_100143692	F050747	N/A	LKIRSYIHRMSKQGRNLESMEFWTVIEKMDFNGRGYKAAGRWLVEDSGLTFSELKNVHNVATRKASYMMRLLNDVTGVGDDAFSDVCWQIIANGKEAYKNATVESTQEMIDNDDYTESFAYAFHAVNDIVDEQQRANLFIKKERAMKRIEEMRRFGGGFDQKLIAAFEHADNGNKRKLAIGFPELFEHLVD
Ga0206125_100143694	F027515	N/A	MDSNHNFFEAMKLVTALSKEQQDRFISEVKQFQRDNVFEQLRVGAIVKINHKKIDPTAQFRVTKINRKNVKVQQLNSAQVIYSVGASLLEVVK
Ga0206125_100143695	F015092	AGTAG	MLDKIKSKLLTKLFISWVNEEFDVELLEASKIMIQQRQDAVNTLADQANPPKPIGFQIPTGGLSSL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10014369

Overview

Ecosystem & Geography

Associated Families

Sequences