Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10013861 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10013861 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5331
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5331

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (84.62%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F012507	Metagenome	280	Y
F017285	Metagenome	241	Y
F019158	Metagenome	231	Y
F025414	Metagenome	202	Y
F037480	Metagenome	168	Y
F086310	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1001386112	F004771	GAGG	MKRIKKGDLVKMHTHDTGLVGIVVDRHPKAISTTPAQVGIIWAGGSGKMDWEPEGWLEVVSESR
Ga0206125_1001386113	F019158	N/A	MKMTIVIDSEDREGIDAALKIARLMHVKYVGTAAAHKESFGKIEFIKMLRKFMKESIEHLDDPDSGQIKDINDMGNLRNAKRFADRIFRGER
Ga0206125_100138612	F012507	N/A	MWTDKLKIGDLVWSRRDDKPAIILDTAETARAKYGDLVNKRMEFKLHVDGQQGWLDEVKLRALYKIP
Ga0206125_100138614	F017285	AGGAG	MSWSGTVTCSHCYQRGHNKRKCPSLTEEIKGKYDGNSRMAVKERAAGNENDARWYDERAEMYRQQYLKRTKIDLATGEKVTNKAAKAARMKKVTCGYCKERGHTRRVCQHVKRDKQIFVEETRRMRIAALESARSTGIGLGSMIPIRSTGYDVDGEWRRDILTMRYVQSVLWDDCHANRTALIVKHIDARKLGAANQSPYTSRDQIQKLVQANSAALRYADAEGQKLPVSSLVPTLDPPKGWLQPTEQSLKVAIKQAFPTKGNDYAKSRNYEYSYPSGITQEIIEALGLQEHYST
Ga0206125_100138615	F086310	GGCGG	MQVGDLVRHFLTEQIGIVLTVVVAKPRRSIASIQVLWTTQGDSLFGPGRKEWCDIKSLDLLTTA
Ga0206125_100138616	F037480	GGA	MQVGDLVHMPGAIEKATGIILRTKPDGINRGTPRLERVKVYWIEDAEASWEPIKWLAVINASR
Ga0206125_100138619	F025414	GGA	MQVGSLVRETMDGNVGVILAWENDGWLVNFPKHGMVFHMLPRLLEVVDESR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10013861

Overview

Ecosystem & Geography

Associated Families

Sequences