Scaffold Ga0206125_10013735

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0206125_10013735

Scaffold Ga0206125_10013735

Overview

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10013735 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5370
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019752	Metagenome / Metatranscriptome	228	Y
F098024	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1001373512	F019752	GAGG	MSKKSIYDSGTTKGSAPRTSDYKKYSDNWDKIFRKKHKEKKTDVEKKDSNS
Ga0206125_100137356	F098024	N/A	MNSKVEMIFDIIITSLKLGAGCILLYMMYQFSQGMEAWVELDRIMR

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