Scaffold Ga0206125_10013194

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10013194
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5545
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024651	Metagenome / Metatranscriptome	205	Y
F038851	Metagenome / Metatranscriptome	165	N
F058045	Metagenome / Metatranscriptome	135	N
F070097	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1001319415	F038851	N/A	MIKPKITKPWSKEMYEYNDYVAEFMKMEIETSINEAEQNDDRDTLNELMTLCGGIKYGDSYTIGELWEDCLNELHNVQNYWLHEEFPYAVSKGWVNDVDLKFVGYDK
Ga0206125_100131945	F024651	N/A	MYNNATFVDKEQIKNLKRMDDFVKNNMDRFPNDVSEKIRELITKILEKGHYFEAEADVLNMVGNEYNQWKKENR
Ga0206125_100131947	F070097	N/A	MRLQKIDNIKLKWINIFFDTIYKHYCKGNNVVYQWELQKELKFLNYLKDCGEYTFDDADKLNSIKNLYLHIKNGTI
Ga0206125_100131949	F058045	N/A	MNWNQLENQLKAKEYSSLPQKIMMEKWEASGRDLHTYWNSIEWDSSWLKHDTPEEKYAKDVTREFNRHPFRDYIEKPKEYIEL