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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020165 Open in IMG/M |
| Scaffold ID | Ga0206125_10012224 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5877 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017322 | Metagenome | 241 | Y |
| F039876 | Metagenome | 163 | Y |
| F077384 | Metagenome | 117 | Y |
| F081436 | Metagenome / Metatranscriptome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206125_1001222412 | F077384 | N/A | DFIVEHERVDRTGGIKFGVVMGAEKGFQDMIVLDVVFPTERLYTFASHCQPYEEWLNENG |
| Ga0206125_100122243 | F081436 | AGGA | MKITKEELRKIIKEELTEAFRMEADFKPGTMVNWNVLAKVVKTTSSGRQKVDYDRMTMTGAVQELVRSGSDVGGVAIVIDPDGNSHEVEISELSHA |
| Ga0206125_100122244 | F017322 | N/A | MEQWRNFLKEGITDVVYHYTNGLEKGAKILEQNRFMASGGFTKDVESELGKGKLYYFSTARTPANAYTGNYPQGVIFKLDGRALAQKYKGVPLDYWATSKRSSKKAANPDPGETEGFEAEDRILLDEPYIEDADRYIDEIHFAIPLYRFEKGMFDDEPKRKAGSAIEAYQMKGLRDGVAIAEQRNIPYYIHIDKQTFPFVEVGKKKALTSLAAFMEEVEKSGVTVNEPRDQASVYRSRKGTEFGEDEVFLYVQAAQDILAGKERFDGTNVKGEVGYKDEAKRKEDGTVMFRNLTGSPNMQGRFYREIDNSLHNVSSNPKARKTLEMLASLMRSTKQKTIKDFETYLNQVYKQNHPDGDPTGYRNT |
| Ga0206125_100122249 | F039876 | GGAGG | MTMIYKSLFLLVFANMFNQAYQMQTITCPKWVPGTNEVLPVGVTLSPQLELENRVRCYCEVVKQKEQECIARHVPANLCKARTAQWVEDNLRLQQPLMNTNGVMRLPQIDRMINVSP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |