Scaffold Ga0206125_10011949

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10011949
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5979
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014805	Metagenome / Metatranscriptome	260	Y
F021015	Metagenome / Metatranscriptome	221	N
F052539	Metagenome / Metatranscriptome	142	N
F091793	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100119491	F052539	N/A	MKVNKDTQTGIVTYTMPNGKTFSAAFKNAPYCVACDGDEVPSTWNGKTYIYMYDWKNRHHDYYCFEDDISTDMAPWEVMGVRHVGD
Ga0206125_1001194910	F021015	N/A	MGLNLNYTKEDGQQADYWKISRVENWFQGTTGPQYAANVNTLGFTNETYRDQGAPSVDGNMYNCPYSGARDYYPYVDATGVSGQVTGQQRVGPPLPSDWDWAENGVSGWMQRSDDIRSGAYTWLKNCVPFFSGSVDAFTIGE
Ga0206125_1001194911	F014805	AGGAG	MGLYKSITTTAGSTLNYWDFGIVEVNTAASEKKDQNAVVNIWGYHDVDYYNAGKPPIERWNQYPCNMISGTDYYSYDMLTGVSGEVTGQKRVGPDLPDGWSWTENSVSGWMSSSSDIRNGAQTWALNCVPAFSGAVVTGQVYPD
Ga0206125_100119496	F091793	N/A	MKTTKDFNMSLYYKVITSASSHKRLLEDEQKKALSEERKDYLKEKISEQDHIIQTMENNSSVFLNASVDNN