Basic Information | |
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Taxon OID | 3300020165 Open in IMG/M |
Scaffold ID | Ga0206125_10010433 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6614 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002747 | Metagenome / Metatranscriptome | 533 | Y |
F003154 | Metagenome / Metatranscriptome | 504 | Y |
F006347 | Metagenome / Metatranscriptome | 375 | Y |
F026404 | Metagenome | 198 | N |
Protein ID | Family | RBS | Sequence |
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Ga0206125_100104334 | F026404 | AGGA | MTIYGKTLEIKNITEGYTKEQIEQNIEQFTEDRNEALYDLYEMKRETLAFNEGGNKYGYLELIDDTDFFTPEDFTDTYNVKGFTDEEIVEILGEMI |
Ga0206125_100104335 | F006347 | AGGAG | MIDRIEQLITTLEQEINDGYNTLPDYQANDEGKTYVNSAQCTLNELQNQVTELKQGLEQGKNFSLLGEDN |
Ga0206125_100104336 | F002747 | GGAGG | MAKDQRYFVDVCLEIYVPDQGCGDKALTNESKDANWFANEIVSQIPRLVNREFKFSERPYSVGDASFVKQQRG |
Ga0206125_100104339 | F003154 | AGGAG | MDTLSYAMNIFGGYYETNRGWRHYRVEGKTYDIKFHPMTLEWACSCPAYKFSRGNKTCKHIKSIQEKAXQSENYLVYYQYDI |
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