Scaffold Ga0206125_10010375

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10010375
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6642
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F012507	Metagenome	280	Y
F014672	Metagenome	261	Y
F026439	Metagenome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1001037510	F008590	GGAG	MQIGDLVTYWYQRPRWRKGQSVHVGLIIETGKFTGNRDVKVLWTNEPEPLTECSQHLSLVDDSLTT
Ga0206125_1001037516	F026439	AGGAG	MATNLDTVTLFAEAVEQFTDLILPMIQESERRLGHVDIPARSEAWSNFVDSLHSDEAISDWQVENWEFPECCDVLTFS
Ga0206125_100103753	F012507	AGGA	MLSPTWTDKLKIGDLLWSRQDDKPAIILDTAETARAKYGDLVNKRMEFKLHIDGQQGWLDEVKLRALYKLP
Ga0206125_100103756	F014672	GAG	MGKFKPGELVRVVEGTHQDGMPEHRTGMIIEEGETSKSYSRAYTIIFLGTDLHLKFHESFLEPFITS
Ga0206125_100103757	F009562	AGGAG	MLAIPLIRTEDDSKLTPIERTTLACEQVITALMMQGTLSDPAVSAEERETFTTLSVATTIPAEA