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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020165 Open in IMG/M |
| Scaffold ID | Ga0206125_10008421 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7802 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (78.12%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018286 | Metagenome | 236 | Y |
| F030886 | Metagenome | 184 | Y |
| F041168 | Metagenome | 160 | Y |
| F057352 | Metagenome | 136 | Y |
| F059942 | Metagenome | 133 | Y |
| F070089 | Metagenome | 123 | Y |
| F079212 | Metagenome | 116 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206125_1000842115 | F070089 | GGA | MKVGDLVKFESALERDVFEADPRREHGLVVQISKTGHDTTSAQVIFNDGELWWVDSGKLEVISESR |
| Ga0206125_1000842117 | F079212 | GAGG | MKEYEKQLIDRCIESHYNMIKHHRRAIIELCRRKSIDERCIECFDFEIINESGRSGKSEE |
| Ga0206125_1000842118 | F018286 | GGAG | MNMLTTFILVGMIDSYDTHFATVELNTTPASNGGPATAVMPIAAFPCDIYEGKVFYVVKLHEDMEATIVCQRDVKDEGIRETTD |
| Ga0206125_1000842120 | F030886 | N/A | MSYHDYPRDNSRGIVVVSPLLKVERKLKKVQDVLDNISDASILTANDLKIKIEKALLED |
| Ga0206125_1000842124 | F041168 | GAG | MKQEKVKRHTVGFFRNDAEVPFINLEMFETITAATSIPHYWRDGDGNVSQFWHAGVIPKGTGVSCTHRERGMKHTFWTVTDPESDLVGKVFVIGHTFKDRKEYDFDKFEYSNVSPTLKYSILAEKPLTK |
| Ga0206125_100084216 | F059942 | GAGG | VKVGDLISFKPIGFGLEDWSNPSIVLEEYEAPNDGLWVVWVDDMRCVIDETNYEVVYLDKEVLNESR |
| Ga0206125_100084219 | F057352 | AGGAG | MKLWVLHGTYESEMFTSIHLTEKGCALAAIADILDFLSVSDEESALQVMNECYAYRDTDGEQTEAFEWDHDKMKEMKSKDLWKIFGDWTETCWERMSDRSYYIDATPQMVQA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |