Scaffold Ga0206125_10007419

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10007419
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8538
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000774	Metagenome / Metatranscriptome	896	Y
F001294	Metagenome / Metatranscriptome	729	Y
F045426	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100074193	F000774	N/A	MALSGRKTITIDAPILITSNKIAVWMDEDWMYNFFDFMKKHKFQFSGLQHKNKKLKLTFATAKDCTMFALKYASRKK
Ga0206125_100074196	F001294	GGAGG	LSKIDLEVSDNLEFDDGDCAVIIKEDGSVGRVIMPKVNKDMLKTEGYKKLLDVLEVLQPGSRDKMIEHAEKEKGSVH
Ga0206125_100074198	F045426	N/A	VYNKTNKKLTKKSKPTVVDLSNDGPFSVVSLSKFLTDYWKIKAKNTWKILNKEGQLDARWIKQELPYWQDLWKARGIKIRWDRRQRSFFLTTVK