Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10007171 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10007171 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8752
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (5.88%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8752

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (5.88%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008425	Metagenome / Metatranscriptome	333	Y
F015210	Metagenome / Metatranscriptome	256	Y
F024797	Metagenome / Metatranscriptome	204	Y
F040126	Metagenome / Metatranscriptome	162	N
F041804	Metagenome / Metatranscriptome	159	Y
F049672	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000717110	F024797	N/A	MSEFLRTTMGRKLLEKDIPKLSSALERIADQMEIKNKLEEKKFRLDEKIKKLQIKDINEK
Ga0206125_1000717111	F040126	N/A	MKKVPLFEDFIPVGFAPSDSASFSLGGTNRAETGYDMNAIVGPVQTLGNHVAEQANSYESNDNAEHTAESYIKEAKKHINDKIDEACESYSAMGESTLNEGTDISSWNQAGIKGSDNAQITTFVGPKDIEDFGLGRKCMQINIGRNYVQLNPADIVELKDLLKNYKV
Ga0206125_1000717112	F049672	N/A	MIPKFNNYLNEASDYEFKPNEAAARLKAREKENIQRYRAAQDRGDNYAIALYELKIKMDKIDLEGLKVQTEIHKLKTKFGK
Ga0206125_100071712	F041804	N/A	LVVEALTFKLSLDFFVYLKKYKIDVSKIRVGFYDQVNQKTEFTDFNSIEEMELFYQNNYVPFDPCFIGDIVSIQLFLGASELYEFTTEYRASDLTGNFTLTEGSSFDIQRNSQRSVFVNRQVSFINKAVKEYRKYWDEIYRIYTLGIYSPCYAVPGWSQGTWYLNQLREVFTSRKDTDEFPYDDATIINEPPE
Ga0206125_100071714	F015210	GGAGG	MYPFHISPVVKERKQINIYCMELFEKYRKWGKDITVFDVDDTLIVTKSKIRVFNPKTGYEIDLTPQEFNTFKTKPHDKFDFNDFRDLEILKAGKIIDWVFNILKRTISKGTAVGIITARDDSKLIYDFLMHNGVDVNPDFIFAINDPSLGFTGSTAQKKKDAFMKFVQMGFRNFKFFDDDKENIKIANSLNKELPEVRMKATLIKQKWIPSFSDFK
Ga0206125_100071719	F008425	N/A	MKKDKDITYEQFIAHMNKGNKVYMKKPRSWQKVWFWWESKKEKWFLNKAFDKREDGIVKPEPSVWITAKQMESHMDHMVRMGYKYYINE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10007171

Overview

Ecosystem & Geography

Associated Families

Sequences