 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020165 Open in IMG/M |
| Scaffold ID | Ga0206125_10007111 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8825 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029448 | Metagenome / Metatranscriptome | 188 | Y |
| F059988 | Metagenome / Metatranscriptome | 133 | Y |
| F080618 | Metagenome / Metatranscriptome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206125_100071113 | F029448 | N/A | MAISVTEILGTDSLSGSRLVLNDNFNIVTSEINAMEVYFNPTAGTITNLNDLKTESLRVGLSTVLLDINASTFDVLTNVNMTGNLSLNGGGLFRNDIDPQTLNDTFAGAVPYNIAVGTSTAIPPYTTERVGNSDGANVVTLSLNDGAIGQEIFFVYSEAQTGTVRITGAVTPLVLSGGNTNIDLAAQGQTVHLLCVDDGTGNGVWFIVGGDAYTLS |
| Ga0206125_100071114 | F080618 | N/A | MANNWQYLNFFDKNGKYLNLDYDKDQDKWTGNVYLPEVSIGLFEVGQLFILQEFINSNTNTKQFGFPHGLEVATGTTGSTNGICNWVAEWETSDPTEIFLFQFDMNFDTGTQTSLEMEPDGPPLKIVSEVEIPLDSDPNYIISPEGFLITDQITSEALQINVAIRSEVENTFKRTLFIKDDCTGNIIAEILFWGETVGEDERLKVMTQNMGYNILESDSSVFRDTNIKEILPNFEEVNLKRKEIMLEGSNIYPFIGSYKGLVNAIKFFGYDKLDVKEFWRNVDANSPQFGKYIMSNSIDIFSPTVQLNDKSITLPNKRFRKTSLFSLVYRINSIVPDKFDEESLPITEENFDFTIEEILIKLFGLKRKLESEFLPLNARIKDITGEADFFGLLEVVNTISRNDKREIVAGIDTSFKLSTDDCIYMEDLRSFSQFCLASEAIVNQAIINYCNAYIAPLPSAQSIGRNLVVGPVSGSYDYPPAPIGPDPNSPLGNIQNGNDFLVSDLADAFLAYFTRYAPKLNKVGAWPDGESSYYLPDKPDIPVGAMTVLKNDSFKNITWDNVNSTWNQLNDANTFFTFDIDPQGVFAGDVFSITDPATGTGASYTAVIGDTDVEVRDALYNQLALLKSSFTDPWLFWDISKETISTGEVIRLFGQNVDRLNASCQSSVGSQLLFNQLPGETLFTWDGIERGNFDEIEWTIYKDATDVSPSYYKKIRGPIAQYNNLPIILPYVGVYSVEMKLYDLYNNISSNVKTDFICVENREVEYSGWYQARKLNYTWSSEGSYNWNDYGSLWNLPITPDVTWDQETPSLYASLDRVNAILNNFGLGTSPDFQLLNFQDDGNASFSSPYRWENLTTGGWDDTYHLWWDMTSTTGDTPAFFQFQEVVPETYLKITDTNGETAEHYFDLSINTLADAAASLNISTNRIINKYVYNVVYDASSNQKFIQAVCRYFGIHGDWTYLDMVEADGSRVCPSTGVTGAPVSTGSTGCPSLIYRKGLSKSSNPTWNTAKFVNNGKTLPKMTWLMFVYDKCKIPGKTNPRWIIKNTTNSKMADIYFESKYLTYLFKESGKYEITLELTDTNGNKYKKGRNILVIK |
| Ga0206125_100071115 | F059988 | AGGA | MNKFTERRTGMPSVYKATYEEGWELKNLGNDYNENLMRNSFSNYMFRNERLGVFLDEYLKPIMTFWINKVKYLRIYYNFGVPKDYQKIN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |