Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10005854 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10005854 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10192
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (84.38%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10192

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (84.38%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016167	Metagenome / Metatranscriptome	249	Y
F023955	Metagenome	208	Y
F036426	Metagenome / Metatranscriptome	170	Y
F054356	Metagenome / Metatranscriptome	140	N
F064099	Metagenome / Metatranscriptome	129	N
F098062	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100058541	F064099	N/A	MSNVYRLIIIILLVYIIWVDHMYVQVGWCESEIDVLRNTIAEIHTILKQ
Ga0206125_1000585413	F054356	AGGAG	MSFNLNNFVNFMDQVKDKDWVDDHVIIDGVSPEFQKQIKDKIRERLKDDNKEPKG
Ga0206125_1000585415	F016167	AGGA	MAKMSERQREYFLSRVNDEIYNHKRSLELKESSAKEKMVKKLYPKYVEQVGLKKDLAELQTLETKYNKLIKHMADTIERMGEVEGMYLCHNRSYNEIVSNLTKLAKKTLDREFIKSPEGKAMLQLDQAHQRAKDIIWSAGSDSNIMQVVGNVLSKDAGISLDFNPLQIENK
Ga0206125_100058542	F036426	AGGA	MKSLIVILTMLFSTLAFAESEYAPSNNDRIILYKVTSDNDNAPEYSGYYRDSNGKVHQVALWTGRSDKYLEGPVTAMTEVASNE
Ga0206125_100058543	F098062	AGGA	MSTQKEMYGQTKDSVIAQFKKVKPLYAGKSNLYIMGILSDAQMMIDNKQYKTANQFINKAKLLLSTKCK
Ga0206125_100058545	F023955	AGGA	MKVIHNIMLVRDNGDIEYHDVEGEWNEEGSGGPSFEPLRKLIDCSMIEIAYGMGDMTKELPMFLDEEGLYNNTNVVNEIATNMQKKWCDANQRMQISPIVGDVAVDLGLSAESLAEVSTEMELQNNERKDNTAEA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10005854

Overview

Ecosystem & Geography

Associated Families

Sequences