Scaffold Ga0206125_10005366

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10005366
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10871
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022858	Metagenome / Metatranscriptome	212	Y
F025148	Metagenome / Metatranscriptome	203	N
F050340	Metagenome / Metatranscriptome	145	Y
F053650	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000536612	F025148	N/A	MANVDFAKGHGTILSGSVKYARLTNESGPDGMSEKYGCDLYLDDASTKQLTDLKVLDHVRAKDPQGNFKHEEPVVKIKSINVPKGYLANRQMFDGLIGDGSEIRANVWIKKWEHKGKKGLSVWLSAYVITNLVEYKTNDSDALFEGLPDVGELPSGFENVPTSKPNVASQADAFGDADSSDLPF
Ga0206125_1000536623	F022858	AGG	MNKTIDTIKGNLKTILSFADSEFLELLIAILHTFLLPLAVWTEIGFKWHVIFLAVGGGLFQFYSVGIRDLRCRYYSTIVATFVAILTAEQYLMNGLMFEAPSRFGWLIIAFAAIVNQIRVTKQWKHKN
Ga0206125_100053667	F050340	N/A	MKHEEFDKMMGYAMDQVKELVEMAKEIKRNRIVDLNQRDLKQNGIEND
Ga0206125_100053669	F053650	N/A	MKKLIRKRRHMAYVRRYIIELQWDSLNTMLVASKTQWNDDIVRALDNNARLIRKYERRRRWLVF