Scaffold Ga0206125_10004704

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10004704
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11908
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (76.19%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F005547	Metagenome	397	Y
F017285	Metagenome	241	Y
F030886	Metagenome	184	Y
F031249	Metagenome	183	Y
F041168	Metagenome	160	Y
F054844	Metagenome	139	Y
F059942	Metagenome	133	Y
F070089	Metagenome	123	Y
F074757	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000470414	F041168	GAG	MKQAKVKRHTVGFFRNDAEVPFINLEMFETITAATSIPHYWRDNDGNVSQFWHAGVIPKGTGVSCTHRERGMKHTFWTVTDPESDLIGKVFVIGHTFKDRTEEEFEKFEYSNISPTLKYSILAEKPLTK
Ga0206125_1000470418	F030886	AGGA	MSYHGNPPPDYNQVGIAVVNPLHRIEQKLKKVQDILDNISDVSVLTANDLKIKIQRVMDG
Ga0206125_1000470422	F059942	GAG	MKVGDLISFKPINFGLEDWSNPCIVISEYESPNEGLWSIWCEGVFCVIDDTNYEIMYLTG
Ga0206125_1000470423	F070089	N/A	MVRVQCSFLDDFAVKVGDLVKFESVLNDSMDHHTVEHGLVIQLSKTGHDTLSAQVLFNDGETWWVDSGRLEVVSESR
Ga0206125_1000470425	F005547	AGGAG	MKVWVMQGSYEGEVFSSVHFTQKGCALACIADVLEFHGVDSAEDALRVMNDCYAYTETDGEQTEPFEWDYEKMKNMSSKELWKIFSEWTEISWDRMADRSYNIDAQPMEIQG
Ga0206125_1000470427	F074757	AGGAGG	VRVGDLVTLSSYCLQKTDMLKWRQKIWFEKKPLVGLVIRVEDNPWQSKREVSTNEKTFYYIKWVQDGPGSRYGRTFHSTDGYFLRNDLKFVKKGDFK
Ga0206125_1000470431	F004771	GGGGG	MRNRPRVGDLVKMHTHDTGLVGIVLERHPKAISTTPAQLGIMWTGGSGKIDWEPEGWLEVVSSA
Ga0206125_1000470436	F031249	AGGAG	MTKVGDLVRVRTKHHGEMLGVVTEVTKDGVRIKPQAHPRDIVALPQDVKVLVSV
Ga0206125_1000470437	F054844	N/A	MTIGTLVAFRGSVGLVMGPCKKRWAAVDDVWVKWTDEPKAKIEAGRFLEVLNASR
Ga0206125_1000470441	F017285	AGGAG	MSYNGTVTCSHCYRQGHNKRKCPQLTEEIKGRYAGATSMAGKERAAGNENDARWYDERAERYRQQYLKRTKIDLATGEKVTNKAAKTARMQNVTCGYCKERGHTRRTCPHVKRDKQIFVEETRRARIAALETARETGIGLGSMIPIRSSGYDVDGEWRSDMLTLRYIKSIAWDTCTSSAPFLAAYHIEARKIAASNQARWTSCDQITKLVQVHDAALRYAAAENEPAPMSSLVPTLDPPKGWLQPTEQSLTKAIKREFPTTGTKYNKQRGYDYAYPSGVTKDVIRDLGLQEHYDHVNWT