Scaffold Ga0206125_10004650

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10004650
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12005
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005012	Metagenome / Metatranscriptome	415	Y
F007392	Metagenome / Metatranscriptome	352	Y
F012576	Metagenome / Metatranscriptome	279	Y
F025596	Metagenome / Metatranscriptome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000465011	F012576	N/A	MNSLLAYIQFIFIGLVIYGSVLTFSDTSFNTSTSGIVAPILAWFAGTGLRASFNGDNNQTKGSIFMAVILLASGYLWINSTGYWYVAHAIEISGKNLLIISFFIGFLSTTKSISELKTKS
Ga0206125_1000465012	F005012	AGG	MKFEAIKTILISLLLFPSMVFADDFELLCKGEEAKYLEEDPSSKEVTTKVIGIQLYEEGMRLDGEWFDNKSDLTEDYLLERSYVKSKDNITGVRNFSTNTLIEGRVIHTSKIDKVEINILTNDIFWTHEFNRVDKTNVDEKTIYAFRKNFQGKCK
Ga0206125_1000465013	F007392	N/A	MFFCSLAFSEDFNLICEGERKVRNLSGKKFNVTNFESVLLKINNNAMEYIGVNSRRSYFFSNREYTAPKRPPHEDIKITEQYQYTPNNIKASQMIADTGDSEESSINLFSLDINLLTGELNETEIIRNKKTNVKSMSNNFQALCKREDR
Ga0206125_100046506	F025596	N/A	MSKYTNTLVNLSYLFGMAILIIGLVDRKMRLMDVSDAQWIILSLVLGIFFPILLNALFFKKFSIHFWNKFN