Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10003703 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10003703 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14279
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14279

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000464	Metagenome / Metatranscriptome	1105	Y
F010001	Metagenome / Metatranscriptome	310	Y
F020386	Metagenome / Metatranscriptome	224	Y
F022908	Metagenome / Metatranscriptome	212	Y
F025320	Metagenome / Metatranscriptome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000370320	F000464	N/A	MYSHHDNDLDFEDEFWPIIGILLAILGAWTGFIHLIDYLTIDAIPWWVEPFTITPVIFLLIMKEHYDSLNPLHWWPMFWGYEAKLPDEDRITIRPLDTERIMDEHGGRLNVYIVDYEHIKFRRKKDAVIFGLRYF
Ga0206125_1000370321	F010001	AGAAG	MQDKASKDEVRLLMAQIGNLEVQVADYQQIVKELSDKLSVYEKKYGTVFVSSRNTSDQK
Ga0206125_100037036	F022908	GAG	MPTHLQEAIKIILSADSKLRDKTPRIYAMPKDEHMPKAFTNLKRMRYLSHDLCAGRNIKRWLWRDYNPEIILQQPPFDRYEDQSEIFTLIRHPEERWWSGIKDMFYFMPWYGWWVNDKIMEQWPHFGRGTLRYHDIMQDIKPQHLIKCDAGLNDRMINFAKTHGLLCYGNIPHEKALRHSKPDIKSLEDKGVRELKAWLRENPDRQKQLDDYLAPDWQYWEKVEYQD
Ga0206125_100037037	F025320	AGGAG	MTTKVNPTKANTTDHLSGKTITAVTVDFAVNGTDFSDTEMGPLGAVQLAIANLSQIGTPLIITKLRSDGSNDGQVFDIIWEGEFGTDTYDGSNSETLAAYLQTELRLLTSVGAGPVNLNSATVVAATAASF
Ga0206125_100037038	F020386	AGGAG	MPISRNNFTALPVEAEQEGVDVSFFTVDFINAMNSETGDPQADSTAAGLALVQAAIMNLGINILATGPLGNSNTELTYMVRADSLDVANHITANGIRDAIRAVDTNGRAASATPRNTANISAATVTAKDVYIAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10003703

Overview

Ecosystem & Geography

Associated Families

Sequences