Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10003566 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10003566 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14739
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (87.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14739

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (87.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005796	Metagenome / Metatranscriptome	390	Y
F062792	Metagenome / Metatranscriptome	130	N
F065219	Metagenome / Metatranscriptome	128	Y
F082468	Metagenome / Metatranscriptome	113	N
F090424	Metagenome / Metatranscriptome	108	N
F091840	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000356617	F082468	GGAG	MSKGDKDRTTDKKAFDEGYERIFGKNQKVKQLQVTDLNWDGDLGLEGDTRNPEDYYKNIEVVTLPKKHMISRMMEKLNKKYPGTLKSLKDKS
Ga0206125_1000356618	F091840	AGGA	MTIVFWAIIVIGTISATNNTMKLNELCKKEVAEGVSKDVKECKQYYFDTRIKTGW
Ga0206125_1000356625	F062792	AGGA	MTPQEIDDHKRRWRMGSYFQYNTHSDLRNDCIEWCKENCETHQWDMKIFTDIYGDTVRFELEGHFVEFNKWYKHLRYSWCVV
Ga0206125_1000356627	F090424	GGAG	MIKVTTEGRKLPEFDTFINECIVALFPDGVNYDIDIRYAKFIEDTGLYGGLCTGDQDSSTIDIATHWKYEDGEIIKYEPHELAGTLAHELTHAKQFCKNQINMVDHVWKHNGVHTDCADMEYMDHPWEVEAYEYEKILVDLLWENV
Ga0206125_1000356630	F005796	GGAG	MLELAIFVFCLVGCGLTCHALGKQEGIETTIEHLVDNGLLELDEEK
Ga0206125_100035667	F065219	AGGAG	MHYDLQQDHNTGNWWIVTQDSHGYRKIVYTLSADLTRFEAKKCMLQLIEEWKND

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10003566

Overview

Ecosystem & Geography

Associated Families

Sequences