Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10003459 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10003459 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15136
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (16.13%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

15136

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (16.13%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028968	Metagenome / Metatranscriptome	190	Y
F043680	Metagenome	156	Y
F043946	Metagenome / Metatranscriptome	155	N
F048981	Metagenome	147	Y
F056969	Metagenome	137	Y
F079339	Metagenome / Metatranscriptome	116	Y
F080615	Metagenome	115	N
F082763	Metagenome / Metatranscriptome	113	N
F100992	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000345910	F043946	N/A	MIKYSELQDLCLSDLQRLKGQVNALIQGKQIIALNKIKVGDKVTVNHKKAGGEYTVVKMNRKTYTLENMFGRVKCSIGLISPIAA
Ga0206125_1000345914	F080615	N/A	MGAKIKPSVKEYKRDARGKMTKQWTWKHYNVESISTKELKEFYTSPSYRRKKEAIRLELVKRNAV
Ga0206125_1000345927	F100992	N/A	MSRSAKSRYTQLMSWLSGYKSSPVSNFRKQQEKKKSNYRGKR
Ga0206125_1000345928	F079339	AGG	MSYLEYRKKVYEDLIKEIDKGTDIKSLRKNLVKEINHLNYLKSYE
Ga0206125_100034593	F056969	N/A	MILIYMQSTIDYMYQKDERLLDTLLQFGEPEIKEIIKEDTIKYYKFKL
Ga0206125_1000345931	F082763	N/A	GKDTIAHVDCREYMYEYIFQLIEEGKLPRKLSAIKYLCMNYRRFVYTNLSMLN
Ga0206125_100034596	F043680	N/A	MTEQTLFNQYLSGNITHAQYIGNLKLINEKHIQNKRSKTPLSGRASKQSTTPSLEEDTWF
Ga0206125_100034598	F048981	N/A	MATLKEIYNELEMIMEDVEAYVEEADNANLASDVAGSVKNPMEKILSALDGIMDDESAGVYEDYGEDEFYEEDESSW
Ga0206125_100034599	F028968	AGCAG	MSILDDFNIEPGKPMGFKIEIMHPTLQCLVGFQYFPADGEAQYETFKLHFLWIVLRWDWV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10003459

Overview

Ecosystem & Geography

Associated Families

Sequences