Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10003436 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10003436 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15206
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (8.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15206

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (8.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014147	Metagenome / Metatranscriptome	265	N
F021987	Metagenome / Metatranscriptome	216	N
F035317	Metagenome / Metatranscriptome	172	N
F051922	Metagenome / Metatranscriptome	143	N
F070126	Metagenome / Metatranscriptome	123	N
F080086	Metagenome / Metatranscriptome	115	N
F104988	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000343615	F080086	N/A	MTNITAMEVSIEALEKECIMHDFTFMENPWRQRHWSREYDRRAKIFTMLDRLGHSSKAIEVYNTYAPDFAKRPLCSKFY
Ga0206125_1000343616	F104988	N/A	MFHEVIDPDFAFIDECETIADYIEEHLYDTLIWQLPIEDEDIYQRTEDVDNYNEVHATAMNQVIAILASRFFYKTNTNSER
Ga0206125_1000343617	F014147	N/A	MTTIKNTFEQQLHQKFGVNVRSLEGVHSAILVDGTHGTDYVSYHDTSPDWVFGVHPKLQAFIDAHGWTCEWRNSEVLDLSPGHDWTSDFSEAQLVSHWNAMCDYITAPLDHVYANDDEAFEMLQLTIRQTVAASKNDRYNFDDKWLTLDGYGNPMSFNSLLNYIDVPELEEYLIAHALI
Ga0206125_1000343618	F051922	N/A	MKRLSLYERLNPDVKAKLIANQLDYEFTVGMVIAKLDSTLFWDELTVRDISNLVVFSDSDMPTDARTMFNGDSNLIQPQNEII
Ga0206125_1000343624	F021987	N/A	MNKNSTQIKDQLVRKGASEVIEEALKAGVFFSDVDEMHEWIEDNFDYNMLGHTDNDYDEVMDIMMEEVHDRVYEFFNQVQAGILEKAFMVQKSLAHDTDL
Ga0206125_100034366	F035317	N/A	MTEMKLYMQRCEELRKQEMAERHAEATDEFGFCSGTNYKEWSAKTGMKGVSRKGKTFSHTKLWDYRG
Ga0206125_100034368	F070126	N/A	MRLYQLYTYCREVIDKYPALRDDVMRHFALAEMECEDDASSEEHEVELSLTDIDDLVADYEMQMGLQK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10003436

Overview

Ecosystem & Geography

Associated Families

Sequences