Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10002792 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10002792 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17753
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (33.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

17753

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (33.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005613	Metagenome / Metatranscriptome	395	Y
F010834	Metagenome / Metatranscriptome	298	Y
F031874	Metagenome / Metatranscriptome	181	N
F039095	Metagenome	164	N
F046025	Metagenome / Metatranscriptome	152	N
F046651	Metagenome / Metatranscriptome	151	N
F081234	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000279214	F005613	N/A	MKKTRKYEFTNEAAADAAIAALPHDEEGVVAHNHNVVKLGYLTIEPAVYDEDGNETKAAVVSDVYAVDVWWFGEPLASWDAQLVWPTPLGIHNFGSSSSRDEYAKTYCELHPDSVYCNPPEPEEVI
Ga0206125_1000279216	F031874	N/A	MIKRCLGNLKEIFLYADSQPTEIMLGMLNFILLLPATIIELGWIPAYQIYGLFVGAFQLFAVAQKNINMRKTASLLSFTVFSTTVTFYALEGYLNNSASHWGWVVLWLSSLSSVKRVHSEYWHRQWNNKA
Ga0206125_100027922	F046025	AGG	MKVIFNQAIAGADFYYTSGQVVELPSAAAAEFLNAGFCEVVEEKPAVKAERAVSKKSTKRNTRAK
Ga0206125_1000279220	F081234	N/A	MSTKDQYIDLCEARVDALVNEVRLLKEFIIRDYAAKGISGTMAMDIFKEFKKNNEDNSQD
Ga0206125_1000279222	F010834	N/A	MILNELCLNLKLPKTISLNALYAGKHWTFRKKTKDEYKKIVEAELARYDHHIAESMSIHIRYNTRADVDNLVLVSKFTADTLVANEWIADDSPKYYHKLTITYDKSVEKNYCEVEVRLKL
Ga0206125_1000279226	F039095	N/A	MDKLKDEDYRWVRGGSKSIALLWLRQKNQDLMQIANALKPQDPSNEYEMDIFIDLVSIYSAIDASIGMVEDVQQMVWAAEAKNADLKLTIRNLTRKINAYEERFDNLNEHLK
Ga0206125_100027927	F046651	GAG	MKITLTKKVTLLSGKKLAKGLTLSVVNEYGQELIEAGKAVEFGAEAPVIIEEQLNNLD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10002792

Overview

Ecosystem & Geography

Associated Families

Sequences