Basic Information | |
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Taxon OID | 3300020165 Open in IMG/M |
Scaffold ID | Ga0206125_10002533 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19136 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (42.42%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000413 | Metagenome / Metatranscriptome | 1169 | Y |
F003169 | Metagenome / Metatranscriptome | 504 | Y |
F003612 | Metagenome | 477 | Y |
F019556 | Metagenome | 229 | Y |
F021862 | Metagenome | 217 | Y |
F028002 | Metagenome / Metatranscriptome | 193 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0206125_100025331 | F003169 | N/A | EKVRQIGHGRIAFNEHGGKSGMAMIKYPLYKKNNSRKNTLLYPGLTTVSLDRIITYMQYYYVMCQRGSLTHRCHVQLDPESADVLHDVLVSKYDLVQVCAVPRGSVESDMLISPAP |
Ga0206125_1000253310 | F028002 | AGGAGG | MDKIIKEVKKNKKAMIGVAVIVVIFAWMLVSGDTTPVDAQ |
Ga0206125_1000253311 | F003612 | GGA | MPTTPNNFKVTTAIGETDNYIGADISFFHITLKDNGASAVDVRTELGYNETVHNVIRAVLDRGTMVHQRIENASTGRIDIAMERAGWTASTLQTAIRDLGSTVGVNNKDLRGSVVTETELKLDNS |
Ga0206125_100025332 | F019556 | N/A | MLVRTVILYVAMTVCAVAFHEHTYAVWELRELLMERQLNLWELFEQLKYVDPDQRGVVYTEIEHIREEISTIIDQLLQHDRSQHP |
Ga0206125_1000253320 | F000413 | N/A | VKKFYSIKLRQFKENIPPALAETMLLDESKLVKYLWKHKALEFRYPKHKARLDLYADEKYLVMGKLKYPTIFGNRKRMGFMELYIVHRINQRMNLARGSN |
Ga0206125_100025338 | F021862 | GGGGG | MYARLRRWFGRYKKHILDSYDPPRPTVYVLGKKKYIKKKVLNRPKGPKGPYIK |
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