Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10002533 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10002533 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19136
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (42.42%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19136

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (42.42%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000413	Metagenome / Metatranscriptome	1169	Y
F003169	Metagenome / Metatranscriptome	504	Y
F003612	Metagenome	477	Y
F019556	Metagenome	229	Y
F021862	Metagenome	217	Y
F028002	Metagenome / Metatranscriptome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100025331	F003169	N/A	EKVRQIGHGRIAFNEHGGKSGMAMIKYPLYKKNNSRKNTLLYPGLTTVSLDRIITYMQYYYVMCQRGSLTHRCHVQLDPESADVLHDVLVSKYDLVQVCAVPRGSVESDMLISPAP
Ga0206125_1000253310	F028002	AGGAGG	MDKIIKEVKKNKKAMIGVAVIVVIFAWMLVSGDTTPVDAQ
Ga0206125_1000253311	F003612	GGA	MPTTPNNFKVTTAIGETDNYIGADISFFHITLKDNGASAVDVRTELGYNETVHNVIRAVLDRGTMVHQRIENASTGRIDIAMERAGWTASTLQTAIRDLGSTVGVNNKDLRGSVVTETELKLDNS
Ga0206125_100025332	F019556	N/A	MLVRTVILYVAMTVCAVAFHEHTYAVWELRELLMERQLNLWELFEQLKYVDPDQRGVVYTEIEHIREEISTIIDQLLQHDRSQHP
Ga0206125_1000253320	F000413	N/A	VKKFYSIKLRQFKENIPPALAETMLLDESKLVKYLWKHKALEFRYPKHKARLDLYADEKYLVMGKLKYPTIFGNRKRMGFMELYIVHRINQRMNLARGSN
Ga0206125_100025338	F021862	GGGGG	MYARLRRWFGRYKKHILDSYDPPRPTVYVLGKKKYIKKKVLNRPKGPKGPYIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10002533

Overview

Ecosystem & Geography

Associated Families

Sequences