Scaffold Ga0206125_10001937

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10001937
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22840
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (57.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008783	Metagenome / Metatranscriptome	328	Y
F020625	Metagenome / Metatranscriptome	223	Y
F030927	Metagenome	184	Y
F097307	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000193716	F030927	GAGG	MGLNLKMFDTLGMLTVVTPPSMMNPEKLSFTIINLREKEKNHFAKALNTLFPNDNITVYMYDHPGYQEWLEQAITKSKYIIMEKTKAPIWIQEMAPEKKTYYVSEEQTIEKTFEIINKKESEA
Ga0206125_1000193718	F097307	N/A	MLLNSLVNIRMADLTLHSTQSTLNKPTTPSSPNGIAHSQADITGTDGLRVDVKSERAAFKADWAAWVLDWKTKYRAGDSLPAAYDGTFTSVDGSTAINLDYADE
Ga0206125_1000193719	F008783	AGGA	MATVQARHERNDPNAGMQGAYYTVDIAMGAFLDTETINGGRLSPCAANDFATKPTTLAQSLLVSRGQLRYKMMLNNLQIRSNCRIINMVTTYSSDAGDNPITDINFGIVFENDDFVPTTGTQADDSTTTTTKVLYIKDKIAEALYASHTELMTVFNPTSGAGLIQNTEVSVGPVMLVSQDEILDGITVAEVAGFRSNVDAETPTDNALTYSAE
Ga0206125_1000193734	F020625	N/A	MSNKFCYYICTVTKSVPDSINFFEEEEEYGYGLPWKDVLAEVEQHYKDGALAVELEMITEEQFNDRLPKPY