Scaffold Ga0206125_10001797

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10001797
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24138
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (85.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018267	Metagenome	236	Y
F025414	Metagenome	202	Y
F034211	Metagenome	175	N
F064211	Metagenome	129	Y
F074152	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000179711	F064211	AGGA	MKAGQVKVWLDQGPAVLLSECDVEGECIALEDFEEDMVLTTERGWVIHLLQTGEMLTVHEETLHNGEMDV
Ga0206125_1000179715	F074152	GAG	MRLLLTTFVLIGTVDSKDELLATVEINMNPATAQPGYAVIPLTAFPCDVEEGDIFYIIKLTEESESVIICKEDQERKEN
Ga0206125_1000179735	F018267	GAGG	VKVGDLISFKPKTFGDDDWSNPALVIDSYVSDDRKDGGRLDEIWIVWIDGEKYMVNERSDDVVYLTSSLLKDT
Ga0206125_1000179739	F025414	AGGAG	MQVGSLVRETMDGNIGVILAWENDGWLVNFPKHGMVFHMLPRLLEVVSNSPDISLTT
Ga0206125_1000179749	F034211	AGGAGG	MAYLKTDDLVIIPNKGGSNIQARVVDMQFRRFRRSWKDKTTGDTKWKWKSVPYAVCECFLGAPVGTEFVIPGYKLKNETKDGEKLLVLRDEYAAEFNGEWVAKVLAESKAKRESAQ