Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10001570 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10001570 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26487
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (28.89%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26487

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (28.89%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004358	Metagenome / Metatranscriptome	442	Y
F022459	Metagenome / Metatranscriptome	214	Y
F036652	Metagenome / Metatranscriptome	169	Y
F043289	Metagenome / Metatranscriptome	156	Y
F073265	Metagenome	120	Y
F102835	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_100015702	F036652	N/A	MKIMNLSLHRSKDEPFVQKWEVARQCVFSARLNQEHIDYPHIPAKLAELLFHVTNAPIELITKTHEKILLALWENCSDKETFYSTSVGDVVKIIDHEGKLTTLMCKSQGWEEL
Ga0206125_1000157034	F004358	N/A	MFGLITMLLSTLGATGMGSMLKIVGGAFQGISEAKAAKERRELIRDMQVREMDIEFQKMLVGETDKDTGIFTRTTRRLIAFMGMLNFFVISVLCTLYPNTTLVTFTPPESKEQINLIWGLIKFPSGAEITTSITTGHIALVAITTLGAIIGFYFTPGGRRG
Ga0206125_1000157039	F102835	N/A	MKVKIKAELDDEAFKTGDFIQELGKIQDQYLDKLVAKVKKEKWIEGMDETEIHDWLFDYCFNGWNNDKDGFEDTFTECIDKCSKYEVE
Ga0206125_1000157041	F022459	GGA	MNEYEEKQNAWQEATDNWVKLTLEKYDRFEPDELTQVFMRGPFAGWSERMVLELAMGMDDANKKVPRHK
Ga0206125_1000157043	F043289	GAG	MKITIEHYEEKVTYESKHDSMGMTVLTEKLYSLCVAAGYHPDSVGESFFEKGREMTEHLYPDDKIEVDFDSAEDVVSSGVSDPIQGSWAGWPDVVVKSRYNEERKFTIISKNCVEYSFEDDGHVGCSRKDDGSLDSVDPSGGPYIAVGTNLSKVHKELEGLTVIKIKRDKSRMGTYYLTV
Ga0206125_100015705	F073265	N/A	MNKTEAYITASKFYLTDELPSNFDELDEQDVTDFIRDNRWEPFEEWEPHGIWDLIEDLASEFLRIANQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10001570

Overview

Ecosystem & Geography

Associated Families

Sequences