Scaffold Ga0206125_10001200

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10001200
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30873
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (85.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003330	Metagenome / Metatranscriptome	493	Y
F005524	Metagenome	398	Y
F028360	Metagenome	192	Y
F032335	Metagenome	180	Y
F093714	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000120030	F028360	N/A	MKDYKPQITMLKVEIKNKEESVLTVDLSDDFVRWFKKEKNLKRWAPKQFQNWLIEVLQGNTTKS
Ga0206125_1000120035	F032335	AGGA	MKVSELKEGMLLRFKEPRIYKFLRDSGEDFWLECGKFDPRRTLKWTSRGQPLMIYLGQRKMSDPSYYGAYFNVREVSIDGKVAWMWPDSWRYVEAV
Ga0206125_1000120038	F005524	GAGG	MIVGDKVQHYGTGSIGTVIDLTHEVSTPFQQMCVQWEDDLAPHKDSWERSEALSIIPHEPYVYSFPD
Ga0206125_1000120052	F093714	AGGTGG	MKIGDLVMKPLGSLCRDDAGLGLVIDVVHRAGRHTPSGYKVQWSNDYGIFWASEDKLERVNENR
Ga0206125_1000120068	F003330	AGGA	MRKHDAWGKPILRVGDIVQSLPLKDDPGTVVKILQVNANGAYVVAVKWFTWDGGRTTEEYITELELMSEV