Scaffold Ga0206125_10000973

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10000973
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35697
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (84.48%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001153	Metagenome / Metatranscriptome	764	Y
F002542	Metagenome / Metatranscriptome	550	Y
F006939	Metagenome / Metatranscriptome	361	N
F030435	Metagenome / Metatranscriptome	185	Y
F030747	Metagenome / Metatranscriptome	184	N
F033044	Metagenome / Metatranscriptome	178	N
F033796	Metagenome / Metatranscriptome	176	N
F036783	Metagenome / Metatranscriptome	169	N
F053299	Metagenome / Metatranscriptome	141	N
F059965	Metagenome / Metatranscriptome	133	N
F065669	Metagenome / Metatranscriptome	127	Y
F072342	Metagenome / Metatranscriptome	121	N
F086976	Metagenome / Metatranscriptome	110	Y
F091982	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000097315	F033044	N/A	MDMILEYAKVFAENADMGSPDGPRAAQAVHHNGGQFIVNAYFTDEEQIQNLEAEGLDLHPMNSDRIRSGNADYGIGKFMKIKRKISDVKNFTDRKGEPITIDYGGAPTIVNLTEGREKKRLWSFEKDGALGNGTKAKVQFEVYANGAGVRLLNVGVTDHVPYEDNNVVTEDDELFII
Ga0206125_1000097318	F030435	N/A	MNNQEILDMCRRLASKYYNHQDYDDIVSEGVVLCLKMRAEGIKEPFKLYYSARTAMFEYVNVGLSKFSYAKGRFGRDAVQEDTTTYVDPEDVQIPADDLFGSYELKDSIEKLKRELSDREWKVFLVLYNNNNNLSHASKELGLSRVSLNTIRNDIRNKLVTICDLTL
Ga0206125_1000097319	F053299	GGAG	MNKEYKPYYRTDKMKQEELRIAKYISILFFTMIGFSFIGFSFVLVKAMLYMTGLFL
Ga0206125_1000097322	F059965	GGA	MPLPPSMEMELMELGILKSDIEELESVAEQTGFYAIRAETIAWHNTLIIDGEVMF
Ga0206125_1000097323	F006939	AGAAGG	MTLPLNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNEKGRIAAEALRKAGYITLKTNKGYKCFNVDRVLGFVAGGRRIFGLGTEV
Ga0206125_1000097324	F033796	AGG	MAENKTYKVAGVHIGKKGVTVLEGKHRVLEEAEQSAKLLTGKYALENSLGITNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGDDTPSVEINRQAEGSI
Ga0206125_1000097325	F072342	AGGAG	MGKEIDWHKARVKKQMKTKRVLKQMSVEQREAIEEIQKSVASCLEMIKDCNDLYMSDVAKLESSWHSLRWAFEVDKV
Ga0206125_1000097327	F086976	GGTGG	MSGDKIPPIDPVTGQFVRPLSGNKVYNTEKELTKGLLNDEIPHELYVELIKVYHEAYEEAPEYGFVGVGCISFAESVLQEHQDGVVRRIRIPTLYDEYSFKQESNDE
Ga0206125_1000097329	F036783	AGGAG	MLEIVRQKYGRHVDTRVYLDLGYGEMEVDVEEIEMIDGELSGMAYCHQREIEMYVDHKDCKRALDKFEEENEQ
Ga0206125_1000097334	F065669	GGAGG	MRYKITSPYVFVDTLHSFFEESGATSGIIGIALGNYIKTSWQDYTGSFTDACEVRVILEESYGLNLPPLDAIQWSQYVTHNASYLGES
Ga0206125_1000097337	F001153	GAG	MIPAKKYSEVIAKKVVAGIKNGVAVRDILGSIQKYQDAPSSTATFYKLYGNLIAETKADIVGEIGSVVVEAAKGGDFKAAEFFLRSKGGWSPNSTVNEVEQDVDPDLDESAIDSLMSLLGKNNPDEEPE
Ga0206125_1000097346	F002542	GGAG	MHPSYLGWQVDWPVFIKMPVTADNRDWKRGDHFNWLERGLHQDKVAILYASGYLYHNEELVVQTKVGDRLSEFSGKQLELLVNLLNSEVKDRTSSTAEFNTKKCKKSKIDDKQRGLIRRFLNNNRWITEDYYKIRDNILGE
Ga0206125_1000097348	F091982	AGAAGG	MSFRAFDLLKLVEDFGETLTLRKITTDGTYNPATGSVVGSSTTDYSFTGYFYDYSSANPEEVIRGVRKCVVPYLGVGKDPFPDDLIIGNGDTVKVTRAVSIFSNGVAMCYICDVQE
Ga0206125_1000097352	F030747	AGGA	MDLMDLKPTSNTVEVKLKHPNTGVVLKNDDKTDMTIVVYATHSKEYKELMHEQTNKRLKDMQSNKSTNLTAQEMEKATLDMLSKITSEWNITYNKEQPKLSVSKAKDLYDEVFWIKDQIEEALADSLDFTKA