Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10000954 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10000954 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36073
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (57.14%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

36073

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (57.14%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002390	Metagenome	565	Y
F013717	Metagenome / Metatranscriptome	269	Y
F015100	Metagenome / Metatranscriptome	257	N
F020911	Metagenome	221	N
F058075	Metagenome	135	N
F062251	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000095440	F002390	AGGA	MKHAAKLFPIALQELIEIGEKARKQREQGERAGHVARPRGARACKHVACREKQAKQLQLQLQTRI
Ga0206125_1000095446	F020911	GGAGG	MTEEEKEKAKSYSTSFRLNEIANARLMTFCELTGMNKSEVVKAAISQFIAPTLQNANVIPPSYNPRVHACVDNINISKDILCCNTTPSKKETQKEETHAWFQAFWEVCKNQQFARRVVKTIRQNWDALENLDPKIVADKYNQHFHEKGNYAKHPNSWLNDGGYDNVVDNSVSTHGLNFDVTMKHPDD
Ga0206125_1000095447	F062251	N/A	MQTLNKIMNKIIFTAMFIAAVITWIWMIFAWLIAIIGG
Ga0206125_1000095449	F015100	GGA	MPTNGKGRKDNTVREETNPFLEHTTRYESVGASKREERNAEGSDDRHRVRIISKRVRICDPDNLVGGVKYLVDSLRAADIIPEDDPQAITLEVSQEKVKTYKEEETWVEVSVHE
Ga0206125_100009545	F058075	N/A	MGNLKTELLTKLKGYAPYQQIVALYEDKAPFFKELHNYMIGGMVCSNPSYFMMCKAIDGSKDASDQWFCKTPDTWYIRWVAGEGCIKEMMEQLEPLPFLKFRRITPNGETNIRTYSWDRMYKIVSKKL
Ga0206125_100009548	F013717	GGA	MIDRTAILGMSGTVATFGLAHLDDLFGCIAGVITIVYMGRKLYLEIKNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10000954

Overview

Ecosystem & Geography

Associated Families

Sequences