Scaffold Ga0206125_10000877

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10000877
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37576
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (83.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046023	Metagenome / Metatranscriptome	152	N
F064101	Metagenome	129	N
F070576	Metagenome / Metatranscriptome	123	Y
F090871	Metagenome	108	N
F102048	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000087716	F090871	GAGG	MSRYTKEKYDEFGTRAKEFIKKNPDASRSRISAYAGVYAGTLDRIQEEYGFVMPKPMTPQQKRKASNWGTILGGLSKK
Ga0206125_1000087720	F046023	GGAG	MAKGKEALKKNKDEWKEHQFIYDGYKFTMTYNKKDFNIAHELTGRIITKGNFKE
Ga0206125_1000087733	F064101	AGGAG	MNCDKEYEYEVIGYLLAKVDQETGEEVLNRHGDVKLFKHLDNTIDVLGFSEESVEEIPQ
Ga0206125_1000087739	F102048	AGGAG	MSNYDYDIDINIPTTVRLDNGNVLDLKLDGRVISDLTLDRIFQDIDDFLENEFQGGIQ
Ga0206125_1000087756	F070576	AGGA	MWSWHWFAGCHFGFEWYQDMKMDDSKNKRYFDFFIIDVGCLRIQKCEQVENV