Basic Information | |
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Taxon OID | 3300020165 Open in IMG/M |
Scaffold ID | Ga0206125_10000863 Open in IMG/M |
Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 37820 |
Total Scaffold Genes | 55 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (52.73%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001205 | Metagenome / Metatranscriptome | 748 | Y |
F001377 | Metagenome / Metatranscriptome | 711 | Y |
F009991 | Metagenome / Metatranscriptome | 310 | Y |
F020625 | Metagenome / Metatranscriptome | 223 | Y |
F089506 | Metagenome | 109 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0206125_100008631 | F089506 | N/A | DRYEDQSEIFTLIRKPDDRWWSGIKDMFYFMPWYGWWVNDKIMQQWPHFGRGTLRYHDIMQDIKPQHLIKCDAGLNDRMINFAKTHGLLCYGNIPHEKALRHSKPDIKKLEDNGVKELKAWLRKNPDRQKQLDDYLAPDWQYWEKVEYQD |
Ga0206125_1000086323 | F001205 | N/A | MFKDVIGDWPTHDKFILTSCDGKYFDQYFPRFYKTFMEHWRLPIHVHIIDPTQDSRYKLDRLPVSYTHCTTDKSVLKFPYSYVTYCQAQRFILLGHNLSKNQSVIVADVDGYATREPNDQQRNLVHSDMAFTEYNGRLMATFCNFHHGRQTSAKEAAVKMQQLIEDTDTVGVDQLVIKEVFKKLPFNILTHGEWIRHLDVKTNDDIAEHGKCLIYHEKGCRGKEKGLQTLWTDIGL |
Ga0206125_1000086330 | F020625 | N/A | MSNKLCYYICTVTKAVPDSINFFEEEEEYGYGLPWKDVLRDVKQHYKDGALAVELEMITEEQFNDRLPKPY |
Ga0206125_1000086352 | F001377 | GGA | MLNWLFWAIPQNYIRRYLFTFWLVMFFLPGYILGLHFTKLGFIINWLWFDIVFYGWYRAKQMLGDDE |
Ga0206125_100008638 | F009991 | N/A | MKYQLNSLRLGLIHEDNIYGKPTIFLAMGSQAPDVQPHIDYYKDLYAKKEQNIIIIPFNNNGTEPGDDYEIVAHYENILGIKFYVTEKIDSTHQFFKDFGVPVNNFTEYTFDAKTKFVRK |
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