NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10000760

Scaffold Ga0206125_10000760


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10000760 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40162
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (20.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004461Metagenome / Metatranscriptome437Y
F006322Metagenome / Metatranscriptome376Y
F013231Metagenome / Metatranscriptome273Y
F030556Metagenome / Metatranscriptome185Y
F092935Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1000076013F006322AGAAGMPSKRNKKGDVVKGSGSSLTTLQEEFLKRVHEEGFDATSKIARDLNYTSYYRDRRNQGTAFHRELMAMANSEMKSIEAAKGTNLAALIKIRDLALSEGDMKAAMDSIRIINDMQGYKAPTKVEQTKIDITATIDLTEPTDQQDFLDIDAD
Ga0206125_100007603F004461N/AMSVSIASLPYGDRRQNLFIDSMVKSAAVLNRFRLIDGVKAKVNVPIFDASLTFGTDLCVFTPASSASIAEKEMTVDTYKWAFLNCKNVLEASYRGLLLKKGQHNPETMDAEFKDWVFDYFSKLAAEKALTLAGSEIELELGNDAAVLDHTIPAGGLTSANILDQMEAAYGTMSADMLAAIYGDADRDFKPAFFMNTVNLQKYQIAIAEKFTTTPEGIIEGNIPPYYGMEVIHMASIANDSFFISAPQNLVMLTDDYNDVKAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAQV
Ga0206125_1000076041F030556N/AMADKVFVGKTTVVDTKYGQIVKVALGPQDFEVLTNSKNEKGWVNLEIKDKRDGGKYIQLQGEYNAKAKPVAVNDTDDGLPF
Ga0206125_1000076050F092935N/AMNSTNKETKSSQVHSLILDRKIAFANLVRAYMRFNVDDALNIVVEKDGNISINGNLYKFDVSDYTGCTERYIFFNPSSGRLVLQGNNVKKIYKVEVDLLDEID
Ga0206125_1000076054F013231N/AMLSNRNYYNCKLIKNRIDLYLYEMAQLFANLGTDSTLEDIQAAYKKENEMIDKIAELDPAKALSIRPYAN
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