Scaffold Ga0206125_10000578

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10000578
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46896
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (79.75%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001153	Metagenome / Metatranscriptome	764	Y
F006939	Metagenome / Metatranscriptome	361	N
F030435	Metagenome / Metatranscriptome	185	Y
F033044	Metagenome / Metatranscriptome	178	N
F033796	Metagenome / Metatranscriptome	176	N
F036783	Metagenome / Metatranscriptome	169	N
F059965	Metagenome / Metatranscriptome	133	N
F065669	Metagenome / Metatranscriptome	127	Y
F086976	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000057844	F001153	AGG	MTIQATKYSEIIAKKVTEGIRNGVSVKDIMGSIQQYQNAPSSSATFYKLYGELISQTRADIIGKIGNVVINNALQGDFKAAEFYLRSKGGWSPNSTVNEVEQEADPDEDLAAVDSVMSLLGKNITPDENNS
Ga0206125_1000057850	F065669	AGGAG	MRYKITSPRVFIDTLESFFDEHGGYKSYIVNAFSDYMKTDYEDYVGSFTDACNIRDILNDYYDLNLPPLDAIQWSQYVNHNASYLGES
Ga0206125_1000057854	F036783	AGGAG	MLEIVRTKYGRHVDTRVYLDLGYGEMEVDIEEIEMINGELSGTAYCHQREIEMYVDHKDCQRALDKYEEENNNE
Ga0206125_1000057859	F086976	GGTGG	MSGDKIPPIDPETGQFVRPPDGNKVYKTETELTKGLLNDEIPHELYVELIKVYHEAYEEAPEYGFVGVGCISFAESVLQEHQDGVVRRIRIPTLYDEYSFKEGE
Ga0206125_1000057861	F033796	AGGA	MSSRDENKTYKVAGVNKGKGKGVTVLDGRKRVLEEAEQSAKYLSGKYALENSIGISNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGQEDTPSVEINRQAEGSI
Ga0206125_1000057862	F006939	AGAAGG	MTLPLNMVTNVLSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNEKGRIAAEALRKAGYITLKTKQGYKCFNVDRVLGFVAGGRRIFGLGTEV
Ga0206125_1000057863	F059965	GGA	MPLPPSMEMELMELGILKSDIEELESVAEQTGFYALRAETIAWHNTLIVDGEVMF
Ga0206125_1000057866	F030435	N/A	MNNQEILDMCRRLASKYYNHQDYDDIVSEGVVLCLKMRAEGITDPPKLYYSARTAMYEYVNVGLSKLSYPKGRFGREAAVTDTTVYVDPDEAQIPADDLFGSYELKDSIEVLKKHLTPREWKVFLSLYNNNNSLTDTSKELGISTRGLIDIRNRVRDKLVTFCDFII
Ga0206125_1000057870	F033044	N/A	MDMILEYAKVFPENADMGSADGPRAAQAVHSQGGQYITNAYFTEEAQIGHLEKEGLDLHPMNSDRIRQGNADLGIGKYMKIKRKISDVKNFTDRNGEPVTIDYGGAPTVVNLTEGREKKRLWSFSEDGALGNGTKAKVQFEVYAQGAGVRLLNVGVTDHVPYEENNAITEDDELFIV