Scaffold Ga0206125

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10000277 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020165 Open in IMG/M

Scaffold ID

Ga0206125_10000277 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	69101
Total Scaffold Genes	85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (9.41%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

69101

Total Scaffold Genes

85 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (9.41%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026406	Metagenome	198	N
F029769	Metagenome / Metatranscriptome	187	Y
F037176	Metagenome	168	Y
F041491	Metagenome	160	Y
F056973	Metagenome	137	Y
F076604	Metagenome	118	Y
F087907	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1000027710	F029769	N/A	MPQNYTFSASANVSATSTTGYSQNASGSFSLNITGVDQVATGRLDVAHDSDATIMAAAGFGRAVYVRNLDDTNFVTIYNGASSGTDPIAVLEPGEFCFTVLRSTTTTVAKADTATVTVEYFALEIDTNA
Ga0206125_1000027715	F087907	N/A	LDKATKRYNIPIWLSSWTFIDGNKKKYILNNFIVKGHNKGEIFTNKKIVNKAVNKLKRGRKKGKIVPVNLSLISQHGFGVNDN
Ga0206125_1000027722	F026406	N/A	MKNSVVFEGGIDKVSTLADGSLRVYLGTPELTSETMVNLFGMIKKPGYVLISTSTINQDQVDAVEKATTNVEFSEKTPSQRMRGVLYKLWEKTQPKTMNGDTGQMEYVDFDLFYKRQMNKIIDHFKTKLD
Ga0206125_1000027734	F076604	N/A	MSNEVTTCCGSSFEDSWISDCCSVEMYSDSDICPSCKEHTDTTGYICNECGNWTEDLEEKYEYDARMEENYLEEKADAKRKYGE
Ga0206125_1000027746	F041491	N/A	MSKIETTSISFNVSKSINIGNFEAVKINYGQSITVNPTKPVEIQREMLIEECYKVVKRETEIWEGLKAVQYIDRNKKTNVVKAKSFTSFKDQQEH
Ga0206125_100002776	F037176	N/A	VRKICYTLLFILFSCSGLERPLEETSVMINNDLDSLIKLADKAIDNLNNRKEQTKEAQLKLNKRLLDIARLKDRYKDSIGDLRSLKLINRDSVIYDYRIETHEIVDSVEITVYIPDSICPVCTRKKENSIFNIFKNKKNKNYEKSNL
Ga0206125_1000027772	F056973	N/A	MLYKSIDYSLYYNIIKRFFEILIRDIVVRDRIVSLPNKMGYVYLDEKPHKRAFHIRVDNEATKEAGETIYNRIPILDDFYKKLVWVRPTKYRNCKILPLGWSKKIINYKD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206125_10000277

Overview

Ecosystem & Geography

Associated Families

Sequences