Scaffold Ga0206125_10000057

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10000057
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 142028
• Total Scaffold Genes: 159
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 138 (86.79%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F010950	Metagenome	297	Y
F018286	Metagenome	236	Y
F019158	Metagenome	231	Y
F030886	Metagenome	184	Y
F059942	Metagenome	133	Y
F070089	Metagenome	123	Y
F101902	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_10000057140	F030886	AGGA	MGYHDRPPDYMKTGMAVVNPLIRIEKKLKEVQEVLDNISDYSILSATDLKAKIQKVLDGEAE
Ga0206125_10000057144	F005547	AGGAG	MKVWVMQGSYEGEMFSSVHMTQKGCALACIADITEFHGIDDDETALSVMNNTYHGETEEYKEPIEWDQEKLKEMTSEQLWKIFADWCEMSWDRMADRSYNLDANAVEIQA
Ga0206125_10000057145	F010950	GGAG	MMNIWVVRQTCLYDNESYVSSHLTEKGALITAIKTVRSDMCDGIDEDEMEDMRPGLPHNPEEDLMQYSSEQLRGIVEDWWEYSWDINEQAQYQIYETQVEG
Ga0206125_10000057146	F018286	AGGTGG	MKVLTTFILVGMVDSHDAHFATVELNTTPASNGGPATAVMPVAAFPCEIYEGKVFYVVKLHDEQDAVIVCQKEPEDEEPRRGKTD
Ga0206125_10000057149	F070089	GGA	MKVGDLVRFESALNDSMDHYTVEHGLVTQISKTGHDTISAQVLFNDGETWWVDSGRLEVISEAG
Ga0206125_10000057152	F101902	GAGG	MRVGNLVKRRDDHVHHGIVVEVGPQETATDHGSTVAKVQWNDGDLTCEFIKMLEVLSEGR
Ga0206125_10000057153	F059942	GAGG	VKVGDLISFKPIDFGLEDWSNPCIVMSEYESPNEGLWSVWCDGVFCVIDDTNYEILHLTG
Ga0206125_10000057158	F019158	N/A	MTIVIDSDDTQGIDAALKIARLMHVKYVGTAAAHKESFGKIEFIKMLRKFTKESIEHLNDPDSNQVKDIGDMGNLRNAKRFADRIFRGER