Scaffold Ga0206125_10000015

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10000015
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 270383
• Total Scaffold Genes: 315
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (13.33%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022610	Metagenome / Metatranscriptome	213	Y
F030698	Metagenome	184	N
F041654	Metagenome / Metatranscriptome	159	N
F048179	Metagenome / Metatranscriptome	148	N
F048852	Metagenome / Metatranscriptome	147	Y
F064521	Metagenome	128	Y
F065545	Metagenome / Metatranscriptome	127	Y
F069860	Metagenome	123	N
F077044	Metagenome	117	N
F079817	Metagenome / Metatranscriptome	115	N
F082387	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_10000015111	F048852	N/A	MGTAEIKSLIRHGLTAIGTLLVLTGLNTWIPLVDLLTENLDSVINAIEVLIGLGIAVFGFFRNKERFEIVKEAEAK
Ga0206125_10000015114	F041654	GGA	MSLKHIVKKNLIELETKKLNSLTESKIVKGRLGIISESVNFNSKIHTTKFFNKLFLEANHLIKMGISESVVNEDLIMTLKGIMGDDGSKVIDTLKDKLLFFLEGKLNIDGFEKDVLSQTISEIEEEEFSKIFTDKKFLPRSIADVFTREFEEKYLEGLTDTTKEIVMKQIDNDRFKRDIEDKFTTALESLLDSIESNMDSKLRGIRDKVFS
Ga0206125_10000015121	F069860	N/A	MKHYLTLLSLVLLFSGCYQYAEHTYPTMDGTYILRSITVNSTDILNSELVDDDPLSLIYPNPIGPLDSMKVNKSRISISGDRLFAGYYLENGGDHWRVEYPVNITQDFVTGRWVNMNVSYNTPQLNTYRHYVIIEDGLEYLILECPKQYPEGVEGNEYSYSLTFYREGP
Ga0206125_10000015129	F079817	GAG	MTVHELSDYFNQSPNMAKVYKEHKSIGRLIRSNMFKYSNPRRWNNKDLTYKITYIKVDKSENLIVNLKVSGTMGNNWGGEKGTCVTEYVKVNFSSSRRRNDDIRRAVREDVQKFFRLFGMDSYRVEIGKIKVCKEL
Ga0206125_10000015133	F022610	N/A	MKIKLTETQLNKVIIQTIKEQGLYGNTSDVVDYDLPEFLSDTIILQSIENWSDVENSIKEIHKRLIRLEKGLDSGGSHNKAYSTDTDYSSKNKKDVDFESATDSIERDEKLRMDIEQLKKDFEL
Ga0206125_10000015145	F030698	N/A	MKKYIVRFYGWEEEMNGFNLSQEQADKLDEALESGEYESLDSIGMDIEEILGVEFFEGDAFSTTKANYLTENTYVYVYDENENELFSFGLDEMGDIEDHNEEYDYEDVTQIEFVPEKGGVENTLFVSSSSKGGLYEFHIESDEVPKPEDFSIVTGMIEIIDLYYEFIDNVYFKGEKLEIEEWLDNRGKGIYLHYTKLQDLYDFWEKNGIKNPYVD
Ga0206125_10000015176	F064521	N/A	MGHIRKNIKRVLKEYDKEELFDYTPNFSADELLKYIESEWDVEMLSLVNSKINERIDFLNRIADMSAKKEVKGFKRYED
Ga0206125_10000015214	F065545	N/A	MRDLIKKVLREESESMDLMHFWSNSPKVTDADNTEQMDDFMWHIINYVNFPSDGNYRRIKTFIKSLIRYGLIDVEFYTNMYRWLNRKLREISTIEEEFQLSLDYVGGDDSYNDWKWYVLSFGKGNFERLKEGYDDNITFVESLNPVESFQYAWPHPYDFRD
Ga0206125_10000015235	F082387	N/A	MKNVVIIHPQFGQLLNQEFDNEQNQHKIYLNAVHSALALKNPLSMFNGVDNLIHIPYDILKECVIVGNTSSMTLGQYAVTKMKEGVS
Ga0206125_10000015236	F077044	N/A	MENNEISFNLFDNMIHNEPMRWQSIECDLKDNTFFLHHLNNYIKHNPIHELFVDEVPEEYEYLFEDCTIEELTDIRDELLVCMN
Ga0206125_10000015240	F048179	N/A	MKELIRKILREDLEYSHVTDASPKSDEYEMSEGWQGAPKKKELSPQVEEFLFDYWSKNGTELTPCRYIGINCLEYEEEIDKLKIKFYGGYDKALELAKKEIGIGKKRHISSGGYEMDVTPLSIGIISRTEGNPDENPYGTELGMKVRITNGSVQFLDRDDDTRWDFDELFMIDHDIHQDDLYEVTTEIGMAAKESFLDIIDKYGLYMTGMDHNYRNAWRLYGS