Scaffold Ga0206125_10000009

Overview

Basic Information

• Taxon OID: 3300020165
• Scaffold ID: Ga0206125_10000009
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 358085
• Total Scaffold Genes: 374
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 91 (24.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017048	Metagenome / Metatranscriptome	243	Y
F031650	Metagenome / Metatranscriptome	182	Y
F049219	Metagenome / Metatranscriptome	147	Y
F074304	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_10000009189	F017048	AGGA	MYLNKYGYINKKIMSEFNYQPSKSSLRADTVVGFVNRSLLDFKMNEIPGMGPASIEKFGDHGIYTPAQIVAKFLSFVDSPDATAQQVCEDFYNWANPIMGKANTHNLTFALANYSGEHGLFRYE
Ga0206125_10000009191	F031650	N/A	MLHIFCFSINVYQFNKKMDSDMPEMTDTEFDQLKKEYTDAIPEGDAIRTQLKNFNKVQKERLSKMHAFMREKGIMSTDLGGVTFEREEKTTVPAVSIKTLEEIVENPAVVEQYKRDYANTKESLKVRKPKRQRTSSE
Ga0206125_10000009225	F049219	N/A	MIQTESDQILSSRLDSLEQGVNVLDNRVAALDDKVSHVIQMNSEMMIQSSENFRDMRQQMTDTRQELKKSIRQIRGSFSTKCQLILFGTGLATWTLFMAWVMWT
Ga0206125_1000000943	F074304	AGGTGG	MQAGLIFLAGTTGKVLVHSTITPIVKSTLSLITSLRTVDGTPTLQDVIIKLDIPATLQTIESMCMALKCDEEPLKTAAGHVVQAVQQIHQLLTIIADITAAHQAGYISRWRTLLIDNEISQLESLMNILHQRFKLMCDIHSVTS