NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194037_1009281

Scaffold Ga0194037_1009281


Overview

Basic Information
Taxon OID3300020164 Open in IMG/M
Scaffold IDGa0194037_1009281 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L304-6m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5061
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.659Long. (o)-93.748Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008751Metagenome / Metatranscriptome328Y
F025744Metagenome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0194037_100928110F008751N/AMENLVTFIIGQSIIIFGGLIGIYVKISLKLKELEIRVNMVEKQDDQIYKKLDHILAEINKMAIALQNKQDRD
Ga0194037_100928111F025744N/ALFKIYEKLKTHHEDYQAAVEELRLDNASADDKDILLLDEKGGYKFTKEAIKKLTAQVKELGEKEFEFKPIEIANPQGLETFTFLEDWTNGITFVKEEEEEL

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