Scaffold Ga0194037_1006631

Overview

Basic Information

• Taxon OID: 3300020164
• Scaffold ID: Ga0194037_1006631
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L304-6m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6362
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.659
  • Long. (^o): -93.748

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002539	Metagenome	550	Y
F009319	Metagenome	319	Y
F017967	Metagenome	237	Y
F028086	Metagenome	192	Y
F060589	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194037_10066311	F009319	GGA	MIETLVKPPESLDNDVAVIKILQLMGQLSPNDIAYVLRVSLQVYKTIKEID
Ga0194037_100663112	F017967	AGG	MAIKYYVKAAISEYQDQAGVAKKRYQTIGIVTETKKGDLMMKLEMIPLLGLKDGSLWCYLNVPDDKPEGKPQGNYSNQVQDDAIPF
Ga0194037_100663115	F002539	AGGAG	MLDNNYVWTAKGTDITIRWRNMGWTPPSEMQGYKDKWRYYQNLPMRQLDDVAKVEYEAVLKRNKISRVK
Ga0194037_100663116	F028086	AGG	MQEEKVPFGGNLQVPSDDCEEAFFALYPDFFYDGSTSLMLWTQAWQAALDYAESKRPLIYLG
Ga0194037_10066314	F060589	GAGG	MSDLASKDLKYKYQCSVRQLILYRRQMGLRVFREYMNKYREKLPWQLIRDFEDQWTKGNRGELGEWK