NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194039_1230480

Scaffold Ga0194039_1230480


Overview

Basic Information
Taxon OID3300020163 Open in IMG/M
Scaffold IDGa0194039_1230480 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)616
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.688Long. (o)-93.689Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050888Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0194039_12304801F050888N/AKVRYYDQNQIRDPYAQISNSGFTPIGNLKTYGVANMYDRPEPTQLRDLPELYTVPYSTTPFLGNNTTSIKYVNDDSTILRYPVFQNRKSAIDVTQIVTNPGQVFINNPNASPELNNYYEQATTINLLGKDDQQYHTNLDSTKLMLGQSNYGLESKRYINRWDIVDPRVVQNVDNIVMNMKSSDGHVIGLFPCGVSTRNELRNYVE
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