NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194039_1029174

Scaffold Ga0194039_1029174


Overview

Basic Information
Taxon OID3300020163 Open in IMG/M
Scaffold IDGa0194039_1029174 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2146
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.688Long. (o)-93.689Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038792Metagenome165N
F057853Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0194039_10291742F038792AGGAMNTPSRKQFIELITHFKLATEATKEALASEYEQVTRQDAEGQRPITPMLDFCMQRAGTRERAEAIFNHVLKNSRISYWPNPEVAPHLRDNQEIKEVCSKHFIVPVKATEHLLVLCGCNPHDSEGPGAIWQKLAGKKPPFPVVALSEPERIRKALTHFA
Ga0194039_10291743F057853N/AMSKLEQFILFHLFKAPALLLAVAAACGVATGALQHETRRIRGLVQSRTKLDLELIEYDSHFLSTNSSVESVLSAYQIPCRALTNHPFQLELDYEAAKKLERVGLLVSAAEYENGRLTVTLKDYPEAK

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