Scaffold Ga0194039_1029174

Overview

Basic Information

• Taxon OID: 3300020163
• Scaffold ID: Ga0194039_1029174
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-8m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2146
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.688
  • Long. (^o): -93.689

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038792	Metagenome	165	N
F057853	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194039_10291742	F038792	AGGA	MNTPSRKQFIELITHFKLATEATKEALASEYEQVTRQDAEGQRPITPMLDFCMQRAGTRERAEAIFNHVLKNSRISYWPNPEVAPHLRDNQEIKEVCSKHFIVPVKATEHLLVLCGCNPHDSEGPGAIWQKLAGKKPPFPVVALSEPERIRKALTHFA
Ga0194039_10291743	F057853	N/A	MSKLEQFILFHLFKAPALLLAVAAACGVATGALQHETRRIRGLVQSRTKLDLELIEYDSHFLSTNSSVESVLSAYQIPCRALTNHPFQLELDYEAAKKLERVGLLVSAAEYENGRLTVTLKDYPEAK