Basic Information | |
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Taxon OID | 3300020163 Open in IMG/M |
Scaffold ID | Ga0194039_1005061 Open in IMG/M |
Source Dataset Name | Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-8m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6071 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (58.82%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Ontario | |||||||
Coordinates | Lat. (o) | 49.688 | Long. (o) | -93.689 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002539 | Metagenome | 550 | Y |
F017967 | Metagenome | 237 | Y |
F028086 | Metagenome | 192 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0194039_100506111 | F002539 | GAG | MSRNLNEHIWTAAGTDITIRWKINGWIAPSEQQVYKDKWQYYQNLPLRQLDDAAKEQYEAVLRKAKVVRLK |
Ga0194039_100506114 | F017967 | AGG | MAIRYYVKAPVSEYTDKDGTSKKRYQTIGIVTETKKGDLMIKLEMIPFLGLKEGTLWAYLNVPEDKPQSPSLQQIDEDIPF |
Ga0194039_10050619 | F028086 | AGG | MTEENIPFAGNMKVPSDACEEAFFALYPDFFYEGSTSLMLWTQSWQAALDWVQEDTPRIQLI |
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