NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194039_1005061

Scaffold Ga0194039_1005061


Overview

Basic Information
Taxon OID3300020163 Open in IMG/M
Scaffold IDGa0194039_1005061 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6071
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.688Long. (o)-93.689Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002539Metagenome550Y
F017967Metagenome237Y
F028086Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0194039_100506111F002539GAGMSRNLNEHIWTAAGTDITIRWKINGWIAPSEQQVYKDKWQYYQNLPLRQLDDAAKEQYEAVLRKAKVVRLK
Ga0194039_100506114F017967AGGMAIRYYVKAPVSEYTDKDGTSKKRYQTIGIVTETKKGDLMIKLEMIPFLGLKEGTLWAYLNVPEDKPQSPSLQQIDEDIPF
Ga0194039_10050619F028086AGGMTEENIPFAGNMKVPSDACEEAFFALYPDFFYEGSTSLMLWTQSWQAALDWVQEDTPRIQLI

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