NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194039_1000151

Scaffold Ga0194039_1000151


Overview

Basic Information
Taxon OID3300020163 Open in IMG/M
Scaffold IDGa0194039_1000151 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44049
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (51.06%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.688Long. (o)-93.689Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F083634Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0194039_100015111F083634N/AMIPMLKMANQTIILDRLKIKGRLVWLARELRITVEHDADRLTLSNEEFGLLVSAPTLEEGIMGISDELSTLWGVYVAEDPANLTRDALRLRSHLESLLAVGAGS

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