Scaffold Ga0194039_1000027

Overview

Basic Information

• Taxon OID: 3300020163
• Scaffold ID: Ga0194039_1000027
• Source Dataset Name: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L227-8m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 91777
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (23.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Ontario
• Coordinates
  • Lat. (^o): 49.688
  • Long. (^o): -93.689

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002824	Metagenome	527	Y
F017088	Metagenome	242	Y
F040985	Metagenome	160	Y
F041560	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194039_100002712	F040985	N/A	MIDITESPNFISFAGNPVIYETCSDRYLISLGSRASFELVVSAVDTSIGHSFKLQFAGKTLEFKTAGLTDFDGLLFEVGSFGQTFNDFANSIYQCFLENYDIQKYFNVTLDGPGTSNRKIHLQAKQSGTDGSIVFSNVNVIGVGQGVNTPGTDDEYQDFFGILCLVRDSANNPIGEDIKPADFIGCARFDISDYIQSKFAAWEIQRFEFPELSGNFKSHGWDYLLKYRVSFAESIAGNVKGLQSNGWKYALAGGLNHELLTSLNEKYLEYFSIAANKQKFLSWLPLAKYSRSGVMEKLFFLFQDNLTSVQYRLVVIVNFTDGSHKVINATPQVVFPAFSVMEFKVGFDHLDLVNAQPGKIVRSWEVFLMDSNDDYLSERRVFNNDSRVFENEKVFFYRNSFSAYDTFRFLGKSELNLEYERLFGSIVREEKYSFFNAPAKQFSAKETEICKANSGWISLEEKNCLRELLLSLEAYEQIGKELFQIVVKSAKITPFLKDGEYLYNLEIEYERSYQNSFFSVHAPESSANPVILPQPLTWDNMEVSFDDMEITFDQIEY
Ga0194039_100002713	F041560	N/A	MLSILIGDQSLDLNDDFSVSLNLKSPIFNDVGDYSFPFKVPSTARNVSIMGWKNRIASTRSIYETFEGSIRWNGMVLYTGQIKIKTAGEKTFEGTLYINKGNFNFEVKDIFLNRVDLGMMSFESDQQAVDYFNWSLTHFYPEVDFSMPEISNPTFYDPPATNPELLAYNYIFPDGWLRKYTTDGQCRTILTPFLYLKFVLNKLAEIFGYRLQDEFFTSSIELSRLVVYNSVSLSEVLFGLQKLYYCRLVPNVKVSEFIAGLEKWFNCSFHVDTRQRVIRIVGNKEVLLRSEIVEFSKNILSLTQEIPEQITGFRFLLGPDAGDMAYQAQLDAEKGITEMIKGAVQHFSDIPPYPFTWLGDIYYVVETNTWWQLAVNPYTFLIEWQQLPSGPMLTDKFFYKWGDEKNKFETIFSSLPDKYISVNCGNLGADYQKITPRLFWVGMAGGWGTPVRLRGFANNSNFSLRYPGPNGLFNLYWKDWVNWIMETRKSVKIEKQMNFIELKNLDFTKRYRINGINYLISEISVTLNKASIKSAQLKCFTAP
Ga0194039_100002727	F002824	AGCAG	MTKITAPVLKPTNGGASKEENAVLAAAKTVLNPEENKTEEQKPLLKVEPEKPVVPAPEPVKEMTLMEKILKVENLQLVIEKRAKLVQTRSELERFQTASNDFNCSMRLNDSDGNVFTTSFTPGIKKVIDFLRSSFDASISDVEGKIKF
Ga0194039_100002729	F017088	N/A	MNNFNSYSGDPRQITARFASKCHTCGKPIKKGEQIIYWPNGKHAGHLKCDEADYRNSLASFEDEERYNSQYR