Scaffold Ga0211735_11585460

Overview

Basic Information

• Taxon OID: 3300020162
• Scaffold ID: Ga0211735_11585460
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29990
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (17.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 8 to 14

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017271	Metagenome / Metatranscriptome	241	N
F020651	Metagenome / Metatranscriptome	222	Y
F032560	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211735_1158546021	F032560	N/A	MNQETYQDLENGIQNLLPFERQMLLAKVYHYAWYSTEAYNELTVFLKKWEKQCEFKAVFFNNDSEESINQQ
Ga0211735_1158546032	F020651	GGA	MKIAVILLTLNRNDLTKKVIDQNFHNSGYDADCYLIDNGSDHVPYTLYNWEGCNASFGKRGISAAVNKGLMMTKTYDGVCLMANDILMPQNWLADWVYYSKKIPNTGIIGMHCVQELPPLVDGIYKTHTPFGNNFITKKLIDTIGGYNIEYDPYGMQDRDYAERATIAGFTNYYIIGKSEHIGHDVGNGSEYRKMKDESLMQAQYVWEKYQPIYHNEKRIYANFGDNIQEFRCRIS
Ga0211735_1158546049	F017271	N/A	MITNFEHITRELTEEECKLVPILIKGFSTKKKETAVKAPEIVEAINKQSDKFGLKNKFSEVRLRKIVNFIRSEGILPLMATSNGYYCTDDREEIRSQIDSLTQRAEAIMVSANGLKKYL